BLASTX 2.1.3 [Apr-1-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tca-06n15.b1MT  CHROMAT_FILE: tca-06n15.b1MT PHD_FILE:
tca-06n15.b1MT.phd.1 CHEM: term DYE: big TIME: Fri Aug 17 18:17:32
2001
         (544 letters)

Database: /usr/local/databases/blast/nr
           760,810 sequences; 242,055,612 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAK53175.1| (AF267378) NADH dehydrogenase subunit 6 [Galaxias...    34  1.8
gb|AAK53177.1| (AF267379) NADH dehydrogenase subunit 6 [Galaxias...    33  2.4
gb|AAK53191.1| (AF267386) NADH dehydrogenase subunit 6 [Galaxias...    32  5.3
gb|AAD32585.1|AF125049_1 (AF125049) NADH dehydrogenase subunit 6...    32  5.3
gb|AAK53193.1| (AF267387) NADH dehydrogenase subunit 6 [Galaxias...    32  5.3
gb|AAK53189.1| (AF267385) NADH dehydrogenase subunit 6 [Galaxias...    32  6.9
ref|NP_008301.1|ND6_10885 NADH dehydrogenase subunit 6 [Oncorhyn...    32  6.9
ref|XP_049376.1| E74-like factor 1 (ets domain transcription fac...    32  9.0
sp|P32519|ELF1_HUMAN ETS-RELATED TRANSCRIPTION FACTOR ELF-1 (E74...    32  9.0
gb|AAK53181.1| (AF267381) NADH dehydrogenase subunit 6 [Galaxias...    32  9.0
gb|AAD32587.1|AF125051_1 (AF125051) NADH dehydrogenase subunit 6...    32  9.0
dbj|BAB62698.1| (AB060792) maturase [Aristolochia giberti]             32  9.0
sp|P31396|HR3_DROME PROBABLE NUCLEAR HORMONE RECEPTOR HR3 (DHR3)...    32  9.0
ref|NP_031946.1| E74-like factor 1 [Mus musculus] >gi|3023698|sp...    32  9.0

>gb|AAK53175.1| (AF267378) NADH dehydrogenase subunit 6 [Galaxias johnstoni]
          Length = 173

 Score = 33.9 bits (76), Expect = 1.8
 Identities = 18/45 (40%), Positives = 22/45 (48%)
 Frame = +3

Query: 387 WRIDSCLGYGLIYTLE*LVS*IIFWKGWNIMEWINFIEFLSSGVF 521
           W   S LGY L+Y +  LV+  +FW GW    W    EF    VF
Sbjct: 82  WGDRSVLGYVLVYFMGVLVAAGLFWGGWYEGSWTVVDEFKDLSVF 126


>gb|AAK53177.1| (AF267379) NADH dehydrogenase subunit 6 [Galaxias brevipinnis]
          Length = 173

 Score = 33.5 bits (75), Expect = 2.4
 Identities = 18/45 (40%), Positives = 22/45 (48%)
 Frame = +3

Query: 387 WRIDSCLGYGLIYTLE*LVS*IIFWKGWNIMEWINFIEFLSSGVF 521
           W   S LGY L+Y +  LV+  +FW GW    W    EF    VF
Sbjct: 82  WGDRSVLGYVLVYFVGVLVTAGLFWGGWYEGSWTVVDEFKDLSVF 126


>gb|AAK53191.1| (AF267386) NADH dehydrogenase subunit 6 [Galaxias eldoni]
          Length = 173

 Score = 32.3 bits (72), Expect = 5.3
 Identities = 18/45 (40%), Positives = 21/45 (46%)
 Frame = +3

Query: 387 WRIDSCLGYGLIYTLE*LVS*IIFWKGWNIMEWINFIEFLSSGVF 521
           W   S LGY L Y +  LV+  +FW GW    W    EF    VF
Sbjct: 82  WGDRSVLGYVLAYLVGVLVTAGLFWGGWYEGSWTVVDEFKDLSVF 126


>gb|AAD32585.1|AF125049_1 (AF125049) NADH dehydrogenase subunit 6 [Oncorhynchus masou masou]
 gb|AAD32586.1|AF125050_1 (AF125050) NADH dehydrogenase subunit 6 [Oncorhynchus masou
           ishikawai]
          Length = 173

 Score = 32.3 bits (72), Expect = 5.3
 Identities = 14/39 (35%), Positives = 21/39 (52%)
 Frame = +3

Query: 387 WRIDSCLGYGLIYTLE*LVS*IIFWKGWNIMEWINFIEF 503
           W   S LGY ++YT+  ++   +FW GW    W+   EF
Sbjct: 82  WGDRSVLGYVMVYTVGVVLVAGLFWGGWYETSWVAVDEF 120


>gb|AAK53193.1| (AF267387) NADH dehydrogenase subunit 6 [Galaxias eldoni]
          Length = 97

 Score = 32.3 bits (72), Expect = 5.3
 Identities = 18/45 (40%), Positives = 21/45 (46%)
 Frame = +3

Query: 387 WRIDSCLGYGLIYTLE*LVS*IIFWKGWNIMEWINFIEFLSSGVF 521
           W   S LGY L Y +  LV+  +FW GW    W    EF    VF
Sbjct: 6   WGDRSVLGYVLAYLVGVLVTAGLFWGGWYEGSWTVVDEFKDLSVF 50


>gb|AAK53189.1| (AF267385) NADH dehydrogenase subunit 6 [Galaxias anomalus]
          Length = 173

 Score = 32.0 bits (71), Expect = 6.9
 Identities = 18/45 (40%), Positives = 21/45 (46%)
 Frame = +3

Query: 387 WRIDSCLGYGLIYTLE*LVS*IIFWKGWNIMEWINFIEFLSSGVF 521
           W   S LGY L Y +  LV+  +FW GW    W    EF    VF
Sbjct: 82  WGDRSVLGYVLAYFVGVLVTAGLFWGGWYEGSWTVVDEFKDLSVF 126


>ref|NP_008301.1|ND6_10885 NADH dehydrogenase subunit 6 [Oncorhynchus mykiss]
 sp|P48177|NU6M_ONCMY NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 6
 pir||T09868 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 6 - rainbow
           trout mitochondrion
 gb|AAB03358.1| (L29771) NADH dehydrogenase subunit 6 [Oncorhynchus mykiss]
 gb|AAD32583.1|AF125047_1 (AF125047) NADH dehydrogenase subunit 6 [Oncorhynchus mykiss]
 gb|AAD32584.1|AF125048_1 (AF125048) NADH dehydrogenase subunit 6 [Oncorhynchus mykiss]
 gb|AAK54363.1| (AY032629) NADH dehydrogenase subunit 6 [Oncorhynchus mykiss]
 gb|AAK54366.1| (AY032630) NADH dehydrogenase subunit 6 [Oncorhynchus mykiss]
 gb|AAK54369.1| (AY032631) NADH dehydrogenase subunit 6 [Oncorhynchus mykiss]
 gb|AAK54372.1| (AY032632) NADH dehydrogenase subunit 6 [Oncorhynchus mykiss]
          Length = 173

 Score = 32.0 bits (71), Expect = 6.9
 Identities = 14/39 (35%), Positives = 21/39 (52%)
 Frame = +3

Query: 387 WRIDSCLGYGLIYTLE*LVS*IIFWKGWNIMEWINFIEF 503
           W   S LGY ++YT+  ++   +FW GW    W+   EF
Sbjct: 82  WGDRSVLGYVVVYTVGVVLVAGLFWGGWYETSWVAVDEF 120


>ref|XP_049376.1| E74-like factor 1 (ets domain transcription factor) [Homo sapiens]
          Length = 619

 Score = 31.6 bits (70), Expect = 9.0
 Identities = 15/25 (60%), Positives = 17/25 (68%)
 Frame = +2

Query: 14  PGSTHASVNILVKKKNKNDKGNTHY 88
           P S   + NI VKKKNK+ KGNT Y
Sbjct: 185 PDSPATTPNISVKKKNKDGKGNTIY 209


>sp|P32519|ELF1_HUMAN ETS-RELATED TRANSCRIPTION FACTOR ELF-1 (E74-LIKE FACTOR 1)
 pir||A43361 Ets-related transcription factor Elf-1 - human
          Length = 619

 Score = 31.6 bits (70), Expect = 9.0
 Identities = 15/25 (60%), Positives = 17/25 (68%)
 Frame = +2

Query: 14  PGSTHASVNILVKKKNKNDKGNTHY 88
           P S   + NI VKKKNK+ KGNT Y
Sbjct: 185 PDSPATTPNISVKKKNKDGKGNTIY 209


>gb|AAK53181.1| (AF267381) NADH dehydrogenase subunit 6 [Galaxias brevipinnis]
          Length = 173

 Score = 31.6 bits (70), Expect = 9.0
 Identities = 17/45 (37%), Positives = 21/45 (45%)
 Frame = +3

Query: 387 WRIDSCLGYGLIYTLE*LVS*IIFWKGWNIMEWINFIEFLSSGVF 521
           W   S LGY L Y +  LV+  +FW GW    W    E+    VF
Sbjct: 82  WGDRSVLGYVLAYFVGVLVTAGLFWGGWYEGSWTAVDEYKDMSVF 126


>gb|AAD32587.1|AF125051_1 (AF125051) NADH dehydrogenase subunit 6 [Oncorhynchus keta]
          Length = 173

 Score = 31.6 bits (70), Expect = 9.0
 Identities = 15/39 (38%), Positives = 20/39 (50%)
 Frame = +3

Query: 387 WRIDSCLGYGLIYTLE*LVS*IIFWKGWNIMEWINFIEF 503
           W   S LGY ++YTL  ++   +FW GW    W    EF
Sbjct: 82  WGDRSVLGYVVVYTLGVVLVAGLFWGGWYETSWTAVDEF 120


>dbj|BAB62698.1| (AB060792) maturase [Aristolochia giberti]
          Length = 404

 Score = 31.6 bits (70), Expect = 9.0
 Identities = 24/82 (29%), Positives = 41/82 (49%), Gaps = 4/82 (4%)
 Frame = -1

Query: 511 ELKNSIKFIHSIIFHPFQNIIHDTNHSNVYINP*PKHESIL----HSYLQSI*SIRTRIP 344
           E  ++++ IHSI F  F++ +   NH    + P P H  IL    HS++Q   S+     
Sbjct: 94  EKSHNLRSIHSI-FPFFEDKLSHLNHVLDILIPHPAHLEILVQTLHSWIQDAPSLHLLRF 152

Query: 343 YL*PTMN*SKLITNLPSVYYFS 278
           +L    N +  I +  S+++FS
Sbjct: 153 FLHEYRNSNSFINSKKSIFFFS 174


>sp|P31396|HR3_DROME PROBABLE NUCLEAR HORMONE RECEPTOR HR3 (DHR3)
 pir||A46146 steroid receptor homolog - fruit fly (Drosophila melanogaster)
 gb|AAA28461.1| (M90806) DHR3 [Drosophila melanogaster]
 gb|AAF58826.1| (AE003830) Hr46 gene product [Drosophila melanogaster]
          Length = 487

 Score = 31.6 bits (70), Expect = 9.0
 Identities = 21/71 (29%), Positives = 35/71 (48%)
 Frame = -3

Query: 398 INPPLISSIYIIHSNTHTILITYHELIQINNQPSFSLLLQYNSIRRKQKHRANNHANESY 219
           IN  LI ++   H+NT+T L   H++ +   QP  S +L Y ++ ++          E +
Sbjct: 237 INDVLIKTLAEAHANTNTKLEAVHDMFR--KQPDVSRILYYKNLGQE----------ELW 284

Query: 218 HTCASKLREQI 186
             CA KL + I
Sbjct: 285 LDCAEKLTQMI 295


>ref|NP_031946.1| E74-like factor 1 [Mus musculus]
 sp|Q60775|ELF1_MOUSE ETS-RELATED TRANSCRIPTION FACTOR ELF-1 (E74-LIKE FACTOR 1)
 gb|AAB17097.1| (U19617) Elf-1 [Mus musculus]
          Length = 612

 Score = 31.6 bits (70), Expect = 9.0
 Identities = 15/25 (60%), Positives = 17/25 (68%)
 Frame = +2

Query: 14  PGSTHASVNILVKKKNKNDKGNTHY 88
           P S   + NI VKKKNK+ KGNT Y
Sbjct: 185 PDSPTTTPNISVKKKNKDGKGNTIY 209


  Database: /usr/local/databases/blast/nr
    Posted date:  Oct 2, 2001  5:36 PM
  Number of letters in database: 242,055,612
  Number of sequences in database:  760,810
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 250156381
Number of Sequences: 760810
Number of extensions: 5159294
Number of successful extensions: 14047
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 13421
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14038
length of query: 181
length of database: 242,055,612
effective HSP length: 52
effective length of query: 128
effective length of database: 202,493,492
effective search space: 25919166976
effective search space used: 25919166976
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 70 (31.6 bits)