BLASTX 2.1.3 [Apr-1-2001] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= tu.fasta.screen.Contig226 (807 letters) Database: /usr/local/databases/blast/nr 1,039,285 sequences; 328,747,273 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|9997013|ref|NP_065227.1| (NC_002521) cytochrome b [Tupaia bel... 411 e-114 gi|7648613|gb|AAF65611.1| (AF141222) cytochrome b [Otomys irrora... 389 e-107 gi|12083031|gb|AAG48718.1| (AF326266) cytochrome b [Eospalax fon... 388 e-107 gi|12083043|gb|AAG48724.1| (AF326272) cytochrome b [Myospalax my... 388 e-107 gi|12083027|gb|AAG48716.1| (AF326264) cytochrome b [Eospalax fon... 388 e-107 gi|7648617|gb|AAF65613.1| (AF141224) cytochrome b [Parotomys bra... 387 e-106 gi|4127884|emb|CAA12402.1| (AJ225115) cytochrome b [Graphiurus m... 387 e-106 gi|14579660|gb|AAK69353.1|AF387082_1 (AF387082) cytochrome b [Eo... 387 e-106 gi|6044366|dbj|BAA85238.1| (AB032852) cytochrome b [Apodemus gur... 386 e-106 gi|14579658|gb|AAK69352.1|AF387081_1 (AF387081) cytochrome b [Eo... 386 e-106 >gi|9997013|ref|NP_065227.1| (NC_002521) cytochrome b [Tupaia belangeri] gb|AAG09463.1|AF217811_13 (AF217811) cytochrome b [Tupaia belangeri] emb|CAD13261.1| (AJ421453) cytochrome b [Tupaia belangeri] Length = 379 Score = 411 bits (1056), Expect = e-114 Identities = 208/229 (90%), Positives = 216/229 (93%) Frame = -1 Query: 774 MANIRIYHPLLEIINHSFIDLPAPSNISSWRNFGSLLGMCLGLQIATGLFLAIHYTADTT 595 MAN+R HPLL+IINHSFIDLPAPSNISSW NFGSLLGMCL LQIATGLFLA+HYTADTT Sbjct: 1 MANMRKNHPLLKIINHSFIDLPAPSNISSWWNFGSLLGMCLVLQIATGLFLAMHYTADTT 60 Query: 594 TAFSSVTHICRDVNYR*VIRYLHANGASILFACLTLHVGRGLYYGSYIYLET*NIGVILL 415 TAFSSVTHICRDVNY VIRYLHANGAS+ FACL LHVGRGLYYGSY+YLET NIGVILL Sbjct: 61 TAFSSVTHICRDVNYGWVIRYLHANGASMFFACLFLHVGRGLYYGSYMYLETWNIGVILL 120 Query: 414 FTTIATAFIGYVLP*GQISF*GATVITNLLSAIPYVGTDLVE*I*GGFSVDKATLTRFFA 235 FTT+ATAF+GYVLP GQ+SF GATVITNLLSAIPYVGTDLVE I GGFSVDKATLTRFFA Sbjct: 121 FTTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTDLVEWIWGGFSVDKATLTRFFA 180 Query: 234 FHFILPFIITALVIVHLLFLHETGSSNPLGIDSDADKIPFHPYYTIKDI 88 FHFILPFIITALVIVHLLFLHETGSSNPLGIDSDADKIPFHPYYTIKDI Sbjct: 181 FHFILPFIITALVIVHLLFLHETGSSNPLGIDSDADKIPFHPYYTIKDI 229 >gi|7648613|gb|AAF65611.1| (AF141222) cytochrome b [Otomys irroratus] Length = 380 Score = 389 bits (999), Expect = e-107 Identities = 194/229 (84%), Positives = 209/229 (90%) Frame = -1 Query: 774 MANIRIYHPLLEIINHSFIDLPAPSNISSWRNFGSLLGMCLGLQIATGLFLAIHYTADTT 595 M NIR HPLL+IINHSFIDLPAPSNISSW NFGSLLG+CL LQI TGLFLA+HYT+DTT Sbjct: 1 MTNIRKTHPLLKIINHSFIDLPAPSNISSWWNFGSLLGICLMLQILTGLFLAMHYTSDTT 60 Query: 594 TAFSSVTHICRDVNYR*VIRYLHANGASILFACLTLHVGRGLYYGSYIYLET*NIGVILL 415 TAFSSVTHICRDVNY +IRYLHANGAS+ F CL LHVGRG+YYGSY +LET NIGVILL Sbjct: 61 TAFSSVTHICRDVNYGWLIRYLHANGASMFFICLFLHVGRGMYYGSYTFLETWNIGVILL 120 Query: 414 FTTIATAFIGYVLP*GQISF*GATVITNLLSAIPYVGTDLVE*I*GGFSVDKATLTRFFA 235 FT +ATAF+GY+LP GQ+SF GATVITNLLSAIPY+GT LVE I GGFSVDKATLTRFFA Sbjct: 121 FTVMATAFMGYLLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFFA 180 Query: 234 FHFILPFIITALVIVHLLFLHETGSSNPLGIDSDADKIPFHPYYTIKDI 88 FHFILPFIITALVIVHLLFLHETGSSNP G++SDADKIPFHPYYTIKDI Sbjct: 181 FHFILPFIITALVIVHLLFLHETGSSNPTGLNSDADKIPFHPYYTIKDI 229 >gi|12083031|gb|AAG48718.1| (AF326266) cytochrome b [Eospalax fontanierii] Length = 379 Score = 388 bits (996), Expect = e-107 Identities = 191/229 (83%), Positives = 208/229 (90%) Frame = -1 Query: 774 MANIRIYHPLLEIINHSFIDLPAPSNISSWRNFGSLLGMCLGLQIATGLFLAIHYTADTT 595 M N+R HPLL+IINHS IDLPAPSNIS W NFGSLLG+CLGLQI TGLFLA+HYT+DT Sbjct: 1 MTNMRKSHPLLKIINHSLIDLPAPSNISVWWNFGSLLGICLGLQILTGLFLAMHYTSDTL 60 Query: 594 TAFSSVTHICRDVNYR*VIRYLHANGASILFACLTLHVGRGLYYGSYIYLET*NIGVILL 415 TAFSSVTHICRDVNY +IRYLHANGAS+ F CL LHVGRG+YYGSY YLET NIG+ILL Sbjct: 61 TAFSSVTHICRDVNYGWIIRYLHANGASMFFICLFLHVGRGMYYGSYTYLETWNIGIILL 120 Query: 414 FTTIATAFIGYVLP*GQISF*GATVITNLLSAIPYVGTDLVE*I*GGFSVDKATLTRFFA 235 FT +ATAF+GYVLP GQ+SF GATVITNLLSAIPYVGT LVE I GGFSVDKATLTRFFA Sbjct: 121 FTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTSLVEWIWGGFSVDKATLTRFFA 180 Query: 234 FHFILPFIITALVIVHLLFLHETGSSNPLGIDSDADKIPFHPYYTIKDI 88 FHFILPFIITALV+VHLLFLHETGS+NP+G+DS+ADKIPFHPYYTIKDI Sbjct: 181 FHFILPFIITALVVVHLLFLHETGSNNPIGLDSNADKIPFHPYYTIKDI 229 >gi|12083043|gb|AAG48724.1| (AF326272) cytochrome b [Myospalax myospalax] Length = 379 Score = 388 bits (996), Expect = e-107 Identities = 193/229 (84%), Positives = 208/229 (90%) Frame = -1 Query: 774 MANIRIYHPLLEIINHSFIDLPAPSNISSWRNFGSLLGMCLGLQIATGLFLAIHYTADTT 595 MANIR HPLL+IINHS IDLPAPSNIS+W NFGSLLG+CLGLQI TGLFLA+HYT+DT Sbjct: 1 MANIRKSHPLLKIINHSLIDLPAPSNISTWWNFGSLLGICLGLQILTGLFLAMHYTSDTL 60 Query: 594 TAFSSVTHICRDVNYR*VIRYLHANGASILFACLTLHVGRGLYYGSYIYLET*NIGVILL 415 TAFSSVTHICRDVNY +IRYLHANGAS+ F CL LHVGRG+YYGSY YLET NIG+ILL Sbjct: 61 TAFSSVTHICRDVNYGWIIRYLHANGASMFFICLFLHVGRGIYYGSYNYLETWNIGIILL 120 Query: 414 FTTIATAFIGYVLP*GQISF*GATVITNLLSAIPYVGTDLVE*I*GGFSVDKATLTRFFA 235 F +ATAF+GYVLP GQ+SF GATVITNLLSAIPYVGT LVE I GGFSVDKATLTRFFA Sbjct: 121 FALMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTSLVEWIWGGFSVDKATLTRFFA 180 Query: 234 FHFILPFIITALVIVHLLFLHETGSSNPLGIDSDADKIPFHPYYTIKDI 88 FHFILPFIITALVIVHLLFLHETGS+NP G+DS+ADKIPFHPYYTIKDI Sbjct: 181 FHFILPFIITALVIVHLLFLHETGSNNPTGLDSNADKIPFHPYYTIKDI 229 >gi|12083027|gb|AAG48716.1| (AF326264) cytochrome b [Eospalax fontanierii] Length = 379 Score = 388 bits (996), Expect = e-107 Identities = 191/229 (83%), Positives = 208/229 (90%) Frame = -1 Query: 774 MANIRIYHPLLEIINHSFIDLPAPSNISSWRNFGSLLGMCLGLQIATGLFLAIHYTADTT 595 M N+R HPLL+IINHS IDLPAPSNIS W NFGSLLG+CLGLQI TGLFLA+HYT+DT Sbjct: 1 MTNMRKSHPLLKIINHSLIDLPAPSNISVWWNFGSLLGICLGLQILTGLFLAMHYTSDTL 60 Query: 594 TAFSSVTHICRDVNYR*VIRYLHANGASILFACLTLHVGRGLYYGSYIYLET*NIGVILL 415 TAFSSVTHICRDVNY +IRYLHANGAS+ F CL LHVGRG+YYGSY YLET NIG+ILL Sbjct: 61 TAFSSVTHICRDVNYGWIIRYLHANGASMFFICLFLHVGRGMYYGSYTYLETWNIGIILL 120 Query: 414 FTTIATAFIGYVLP*GQISF*GATVITNLLSAIPYVGTDLVE*I*GGFSVDKATLTRFFA 235 FT +ATAF+GYVLP GQ+SF GATVITNLLSAIPYVGT LVE I GGFSVDKATLTRFFA Sbjct: 121 FTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTSLVEWIWGGFSVDKATLTRFFA 180 Query: 234 FHFILPFIITALVIVHLLFLHETGSSNPLGIDSDADKIPFHPYYTIKDI 88 FHFILPFIITALV+VHLLFLHETGS+NP+G+DS+ADKIPFHPYYTIKDI Sbjct: 181 FHFILPFIITALVVVHLLFLHETGSNNPIGLDSNADKIPFHPYYTIKDI 229 >gi|7648617|gb|AAF65613.1| (AF141224) cytochrome b [Parotomys brantsii] Length = 380 Score = 387 bits (994), Expect = e-106 Identities = 192/229 (83%), Positives = 209/229 (90%) Frame = -1 Query: 774 MANIRIYHPLLEIINHSFIDLPAPSNISSWRNFGSLLGMCLGLQIATGLFLAIHYTADTT 595 M NIR HPLL+IINHSFIDLPAPSNISSW NFGSLLG+CL LQI TGLFLA+HY++DTT Sbjct: 1 MTNIRKTHPLLKIINHSFIDLPAPSNISSWWNFGSLLGICLMLQILTGLFLAMHYSSDTT 60 Query: 594 TAFSSVTHICRDVNYR*VIRYLHANGASILFACLTLHVGRGLYYGSYIYLET*NIGVILL 415 TAFSSVTHICRDVNY +IRYLHANGAS+ F CL LHVGRG+YYGSY +LET NIGVILL Sbjct: 61 TAFSSVTHICRDVNYGWLIRYLHANGASMFFICLFLHVGRGMYYGSYTFLETWNIGVILL 120 Query: 414 FTTIATAFIGYVLP*GQISF*GATVITNLLSAIPYVGTDLVE*I*GGFSVDKATLTRFFA 235 FT +ATAF+GYVLP GQ+SF GATVITNLLSAIPY+GT LVE I GGFSVDKATLTRFFA Sbjct: 121 FTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFFA 180 Query: 234 FHFILPFIITALVIVHLLFLHETGSSNPLGIDSDADKIPFHPYYTIKDI 88 FHFILPFIITALVIVHLLFLHETGS+NP G++SDADKIPFHPYYT+KDI Sbjct: 181 FHFILPFIITALVIVHLLFLHETGSNNPTGLNSDADKIPFHPYYTVKDI 229 >gi|4127884|emb|CAA12402.1| (AJ225115) cytochrome b [Graphiurus murinus] Length = 379 Score = 387 bits (993), Expect = e-106 Identities = 190/229 (82%), Positives = 208/229 (89%) Frame = -1 Query: 774 MANIRIYHPLLEIINHSFIDLPAPSNISSWRNFGSLLGMCLGLQIATGLFLAIHYTADTT 595 M NIR HPL++I+NHSFIDLPAPSNIS+W NFGSLLG CLG+QI TGLFLA+HYTADT Sbjct: 1 MTNIRKSHPLIKILNHSFIDLPAPSNISAWWNFGSLLGACLGIQILTGLFLAMHYTADTA 60 Query: 594 TAFSSVTHICRDVNYR*VIRYLHANGASILFACLTLHVGRGLYYGSYIYLET*NIGVILL 415 TAFSSVTHICRDVNY +IRY+HANGAS+ F CL LHVGRGLYYGSY+Y+ET NIG+ILL Sbjct: 61 TAFSSVTHICRDVNYGWLIRYMHANGASMFFICLFLHVGRGLYYGSYMYIETWNIGIILL 120 Query: 414 FTTIATAFIGYVLP*GQISF*GATVITNLLSAIPYVGTDLVE*I*GGFSVDKATLTRFFA 235 FT +ATAF+GYVLP GQ+SF GATVITNLLSAIPY+GT LVE I GGFSVDKATLTRFFA Sbjct: 121 FTIMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFFA 180 Query: 234 FHFILPFIITALVIVHLLFLHETGSSNPLGIDSDADKIPFHPYYTIKDI 88 FHFILPFII ALV+VHLLFLHETGSSNP GI+SDADKIPFHPYYTIKDI Sbjct: 181 FHFILPFIIAALVMVHLLFLHETGSSNPSGINSDADKIPFHPYYTIKDI 229 >gi|14579660|gb|AAK69353.1|AF387082_1 (AF387082) cytochrome b [Eospalax baileyi] Length = 379 Score = 387 bits (993), Expect = e-106 Identities = 192/229 (83%), Positives = 207/229 (89%) Frame = -1 Query: 774 MANIRIYHPLLEIINHSFIDLPAPSNISSWRNFGSLLGMCLGLQIATGLFLAIHYTADTT 595 M N+R HPLL+IINHS IDLPAPSNIS W NFGSLLG+CLGLQI TGLFLA+HYT+DT Sbjct: 1 MTNMRKLHPLLKIINHSLIDLPAPSNISVWWNFGSLLGVCLGLQILTGLFLAMHYTSDTL 60 Query: 594 TAFSSVTHICRDVNYR*VIRYLHANGASILFACLTLHVGRGLYYGSYIYLET*NIGVILL 415 TAFSSVTHICRDVNY +IRYLHANGAS+ F CL LHVGRG+YYGSY YLET NIG+ILL Sbjct: 61 TAFSSVTHICRDVNYGWIIRYLHANGASMFFICLFLHVGRGMYYGSYNYLETWNIGIILL 120 Query: 414 FTTIATAFIGYVLP*GQISF*GATVITNLLSAIPYVGTDLVE*I*GGFSVDKATLTRFFA 235 FT +ATAF+GYVLP GQ+SF GATVITNLLSAIPYVGT LVE I GGFSVDKATLTRFFA Sbjct: 121 FTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTSLVEWIWGGFSVDKATLTRFFA 180 Query: 234 FHFILPFIITALVIVHLLFLHETGSSNPLGIDSDADKIPFHPYYTIKDI 88 FHFILPFIITALVIVHLLFLHETGS+NP G++SDADKIPFHPYYTIKDI Sbjct: 181 FHFILPFIITALVIVHLLFLHETGSNNPTGLNSDADKIPFHPYYTIKDI 229 >gi|6044366|dbj|BAA85238.1| (AB032852) cytochrome b [Apodemus gurkha] Length = 380 Score = 386 bits (992), Expect = e-106 Identities = 190/229 (82%), Positives = 209/229 (90%) Frame = -1 Query: 774 MANIRIYHPLLEIINHSFIDLPAPSNISSWRNFGSLLGMCLGLQIATGLFLAIHYTADTT 595 M NIR HPLL+IINHSFIDLPAPSNISSW NFGSLLG+CL +QI TGLFLA+HYT+DTT Sbjct: 1 MTNIRKTHPLLKIINHSFIDLPAPSNISSWWNFGSLLGLCLMIQIITGLFLAMHYTSDTT 60 Query: 594 TAFSSVTHICRDVNYR*VIRYLHANGASILFACLTLHVGRGLYYGSYIYLET*NIGVILL 415 TAFSSVTHICRDVNY +IRYLHANGAS+ F CL LHVGRG+YYGSY+++ET NIGV+LL Sbjct: 61 TAFSSVTHICRDVNYGWLIRYLHANGASMFFICLFLHVGRGMYYGSYMFMETWNIGVVLL 120 Query: 414 FTTIATAFIGYVLP*GQISF*GATVITNLLSAIPYVGTDLVE*I*GGFSVDKATLTRFFA 235 F +ATAF+GYVLP GQ+SF GATVITNLLSAIPY+GT LVE I GGFSVDKATLTRFFA Sbjct: 121 FAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFFA 180 Query: 234 FHFILPFIITALVIVHLLFLHETGSSNPLGIDSDADKIPFHPYYTIKDI 88 FHFILPFIITALVIVHLLFLHETGS+NP G++SDADKIPFHPYYTIKDI Sbjct: 181 FHFILPFIITALVIVHLLFLHETGSNNPTGLNSDADKIPFHPYYTIKDI 229 >gi|14579658|gb|AAK69352.1|AF387081_1 (AF387081) cytochrome b [Eospalax baileyi] gb|AAK69355.1|AF387084_1 (AF387084) cytochrome b [Eospalax baileyi] Length = 379 Score = 386 bits (991), Expect = e-106 Identities = 192/229 (83%), Positives = 207/229 (89%) Frame = -1 Query: 774 MANIRIYHPLLEIINHSFIDLPAPSNISSWRNFGSLLGMCLGLQIATGLFLAIHYTADTT 595 M N+R HPLL+IINHS IDLPAPSNIS W NFGSLLG+CLGLQI TGLFLA+HYT+DT Sbjct: 1 MTNMRKSHPLLKIINHSLIDLPAPSNISVWWNFGSLLGVCLGLQIFTGLFLAMHYTSDTL 60 Query: 594 TAFSSVTHICRDVNYR*VIRYLHANGASILFACLTLHVGRGLYYGSYIYLET*NIGVILL 415 TAFSSVTHICRDVNY +IRYLHANGAS+ F CL LHVGRG+YYGSY YLET NIGVILL Sbjct: 61 TAFSSVTHICRDVNYGWIIRYLHANGASMFFICLFLHVGRGMYYGSYNYLETWNIGVILL 120 Query: 414 FTTIATAFIGYVLP*GQISF*GATVITNLLSAIPYVGTDLVE*I*GGFSVDKATLTRFFA 235 FT +ATAF+GYVLP GQ+SF GATVITNLLSAIPYVGT LVE I GGFSVDKATLTRFFA Sbjct: 121 FTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTSLVEWIWGGFSVDKATLTRFFA 180 Query: 234 FHFILPFIITALVIVHLLFLHETGSSNPLGIDSDADKIPFHPYYTIKDI 88 FHFILPFIITALV+VHLLFLHETGS+NP G++SDADKIPFHPYYTIKDI Sbjct: 181 FHFILPFIITALVVVHLLFLHETGSNNPTGLNSDADKIPFHPYYTIKDI 229 Database: /usr/local/databases/blast/nr Posted date: Sep 9, 2002 3:34 PM Number of letters in database: 328,747,273 Number of sequences in database: 1,039,285 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 446138373 Number of Sequences: 1039285 Number of extensions: 9247882 Number of successful extensions: 41750 Number of sequences better than 1.0e-03: 14451 Number of HSP's better than 0.0 without gapping: 37367 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 39778 length of query: 269 length of database: 328,747,273 effective HSP length: 54 effective length of query: 214 effective length of database: 272,625,883 effective search space: 58341938962 effective search space used: 58341938962 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 107 (45.8 bits)